Welcome to ScanITD’s Documentation
ScanITD is a Python tool for detecting internal tandem duplications (ITDs) from BAM files with robust variant allele frequency estimation.
User Guide
API Reference
- CLI Reference
- Inference API
- Base API
- Writer API
VCFWriterVCFWriter.num_fieldsVCFWriter.reserved_infoVCFWriter.reserved_formatVCFWriter.reserved_altVCFWriter.descriptionVCFWriter.__init__()VCFWriter.is_openedVCFWriter.formatter()VCFWriter.open()VCFWriter.close()VCFWriter.write_line()VCFWriter.write_header()VCFWriter.write_data()VCFWriter.headerVCFWriter.get_contigs()
Writer- Abstract base writer
- VCF writer
Development